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Open-source image analysis software

Following Basic Package is available on all analysis workstations:

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FIJI: the workhorse for most image analysis routines.

Download the free version here.

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Volocity: software solution for 3D image analysis.

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ZEN lite: software solution to view and edit annotations of images in ".czi" file format.

Download the free version here.

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LAS X: software solution to view and edit annotations of images in ".lif" file format.

Download the free version here.

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GraphPad Prism : preferred analysis and graphing solution, purpose-built for scientific research. 

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ilastik: a user-friendly machine learning tool for interactive image classification, segmentation, and analysis.

Download the free version here.

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Cell Profiler + Analyst: software for quantitative analysis of biological images.

Download the free version here.

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RStudio: integrated development environment for R, a programming language

for statistical computing and graphics. Download the free version here.

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QuPath: a powerful, flexible, and extensible software platform for whole slide image analysis. Download the free version here.

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