Hardware
Workstation #1 aka King Arthur
This image processing workstation features Zen 3.6 with AI tool kit for Life Science Research to provide fast image analysis throughput, while avoiding user bias. This toolkit also contains solutions for image denoising, image segmentation, and object classification.
CPU: Intel Xeon E5-2623 @ 3.00GHz
RAM: 192 GB
GPU: Nvidia Quadro K2200
OS: Windows 7 Pro
Workstation #2 aka Sir Galahad
This analysis workstation features Imaris 10 for Cell Biologists package, which is ideal 3D/4D visualization and analysis tools. This package also has the functionality for smart cell based segmentation, analysis on a per cell basis and discovery of intracellular relationships. The package includes automated tracking, detection of cell division and creation of interactive lineage trees along with statistical tests and a two-way interface for customization in Matlab, Java or Python.
CPU: Intel i9-12900KF; @ < 5.2 GHz
RAM: 128 GB
GPU: Nvidia RTX-A4000 16 GB
OS: Windows 10
Workstation #3 aka Sir Lancelot
This analysis workstation features Leica software, LAS X 3.5 that provides quick and efficient 3D rendering and image processing tools. This workstation also provides access to Volocity 6.5 with MicroVolution module.
CPU: i7-3930K @ 3.20GHz
RAM: 32 GB
GPU: Nvidia GTX 580
OS: Windows 10 Pro
Software
Following Basic Package is available on all analysis workstations:
Volocity: software solution for 3D image analysis.
ZEN lite: software solution to view and edit annotations of images in ".czi" file format.
Download the free version here.
LAS X: software solution to view and edit annotations of images in ".lif" file format.
Download the free version here.
GraphPad Prism : preferred analysis and graphing solution, purpose-built for scientific research.
ilastik: a user-friendly machine learning tool for interactive image classification, segmentation, and analysis.
Download the free version here.
Cell Profiler + Analyst: software for quantitative analysis of biological images.
Download the free version here.
RStudio: integrated development environment for R, a programming language
for statistical computing and graphics. Download the free version here.
