Software

All 3 workstations come with a Basic Package:

ilastik

  user-friendly machine learning tool for interactive image classification, segmentation and analysis

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FIJI

  the workhorse for most image analysis routines

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Cell Profiler + Cell Analyst

  software for quantitative analysis of biological images

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QuPath

  powerful, flexible, extensible software platform for whole slide image analysis

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RStudio

  integrated development environment for R, a programming language

for statistical computing and graphics

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ZEN lite

  software solution to view shares microscope images in CZI file format

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Volocity

  software solution for 3D image analysis

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Hardware

Workstation #1 aka Sir Lancelot

  CPU: i7-3930K @ 3.20GHz

  RAM: 32 GB

  GPU: Nvidia GTX 580

  OS: Windows 10 Pro

Workstation #2 aka Patsy

  CPU: Intel Xeon E5-1620 v2 @ 3.70GHz

  RAM: 8 GB

  GPU: Nvidia Quadro K600

  OS: Windows 7 Pro

Workstation #3 aka King Arthur

 

 

 

 

 

 

For AiryScan Image Processing and the

most RAM demanding tasks

CPU: Intel Xeon E5-2623 @ 3.00GHz

  RAM: 192 GB

  GPU: Nvidia Quadro K2200

  OS: Windows 7 Pro

Faculty of Dentistry

University of Toronto

124 Edward Street

4th floor

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