Software

All 3 workstations come with a Basic Package:

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FIJI: the workhorse for most image analysis routines

ilastik: user-friendly machine learning tool for interactive image classification, segmentation and analysis

Cell Profiler + Analyst: software for quantitative analysis of biological images

QuPath: powerful, flexible, extensible software platform for whole slide image analysis

RStudio: integrated development environment for R, a programming language for statistical computing and graphics

ZEN lite: software solution to view shares microscope images in CZI file format

Volocity: software solution for 3D image analysis

Analysis Workstation

Workstation #1 aka King Arthur

 

 

 

 

 

 

For AiryScan Image Processing and the

most RAM demanding tasks

CPU: Intel Xeon E5-2623 @ 3.00GHz

  RAM: 192 GB

  GPU: Nvidia Quadro K2200

  OS: Windows 7 Pro

Workstation #2 aka Sir Lancelot

 

 

 

CPU: i7-3930K @ 3.20GHz

  RAM: 32 GB

  GPU: Nvidia GTX 580

  OS: Windows 10 Pro

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Faculty of Dentistry, University of Toronto

124 Edward Street 4th floor

camilod.info@utoronto.ca |  Tel: 416-864-8490

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