Image Analysis Workstations

Software

Following Basic Package is available on all analysis workstations:

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FIJI: the workhorse for most image analysis routines.

Download the free version here.

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Volocity: software solution for 3D image analysis.

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ZEN lite: software solution to view and edit annotations of images in ".czi" file format.

Download the free version here.

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LAS X: software solution to view and edit annotations of images in ".lif" file format.

Download the free version here.

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GraphPad Prism : preferred analysis and graphing solution, purpose-built for scientific research. 

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ilastik: a user-friendly machine learning tool for interactive image classification, segmentation, and analysis.

Download the free version here.

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Cell Profiler + Analyst: software for quantitative analysis of biological images.

Download the free version here.

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RStudio: integrated development environment for R, a programming language

for statistical computing and graphics. Download the free version here.

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QuPath: a powerful, flexible, and extensible software platform for whole slide image analysis. Download the free version here.

Hardware

Workstation #1 aka King Arthur

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For AiryScan Image Processing and the most RAM demanding tasks.

CPU: Intel Xeon E5-2623 @ 3.00GHz

  RAM: 192 GB

  GPU: Nvidia Quadro K2200

  OS: Windows 7 Pro

Workstation #2 aka Sir Lancelot

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CPU: i7-3930K @ 3.20GHz

  RAM: 32 GB

  GPU: Nvidia GTX 580

  OS: Windows 10 Pro